ultra-deep pyrosequencing data Search Results


ultra-deep targeted kiv-2 ngs data  (Saphir Medical Products GmbH)
90
Saphir Medical Products GmbH ultra-deep targeted kiv-2 ngs data
Ultra Deep Targeted Kiv 2 Ngs Data, supplied by Saphir Medical Products GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/ultra-deep+pyrosequencing+data/ultra+deep+targeted+sequencing/bio_rxiv__2024__03__01__582741-120-2-9
Average 90 stars, based on 1 article reviews
ultra-deep targeted kiv-2 ngs data - by Bioz Stars, 2026-10
90/100 stars
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oxford nanopore sequencing gridion  (Oxford Nanopore)
90
Oxford Nanopore oxford nanopore sequencing gridion
Oxford Nanopore Sequencing Gridion, supplied by Oxford Nanopore, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/ultra-deep+pyrosequencing+data/oxford+nanopore+gridion/pm36324140-306-28-23
Average 90 stars, based on 1 article reviews
oxford nanopore sequencing gridion - by Bioz Stars, 2026-10
90/100 stars
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oxford nanopore sequencing  (Oxford Nanopore)
90
Oxford Nanopore oxford nanopore sequencing
Oxford Nanopore Sequencing, supplied by Oxford Nanopore, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/ultra-deep+pyrosequencing+data/oxford+nanopore+sequencing/bio_rxiv__2025__05__28__656579-97-22-19
Average 90 stars, based on 1 article reviews
oxford nanopore sequencing - by Bioz Stars, 2026-10
90/100 stars
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nextgene  (SoftGenetics)
90
SoftGenetics nextgene
Comparison of RC normalization and accuracy of CNV calls achieved by ONCOCNV, ADTEx and <t>NextGENe</t> for samples from dataset A. ( A ) Correlation between NRCs and log ratio values of array CGH. ( B ) Prediction accuracy. Accuracy = (#True predictions)/(#All predictions), where each prediction corresponds to a gene copy number status (gain, neutral or loss). ( C ) True-positive rate. ( D ) False-positive rate
Nextgene, supplied by SoftGenetics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/ultra-deep+pyrosequencing+data/nextgene/pmc04253825-141-42-47
Average 90 stars, based on 1 article reviews
nextgene - by Bioz Stars, 2026-10
90/100 stars
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illumina miseq  (Illumina Inc)
99
Illumina Inc illumina miseq
Comparison of RC normalization and accuracy of CNV calls achieved by ONCOCNV, ADTEx and <t>NextGENe</t> for samples from dataset A. ( A ) Correlation between NRCs and log ratio values of array CGH. ( B ) Prediction accuracy. Accuracy = (#True predictions)/(#All predictions), where each prediction corresponds to a gene copy number status (gain, neutral or loss). ( C ) True-positive rate. ( D ) False-positive rate
Illumina Miseq, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/ultra-deep+pyrosequencing+data/MiSeq+System/pm31147688-202-15-15
Average 99 stars, based on 1 article reviews
illumina miseq - by Bioz Stars, 2026-10
99/100 stars
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hiseq 2500 machine  (Illumina Inc)
94
Illumina Inc hiseq 2500 machine
Comparison of RC normalization and accuracy of CNV calls achieved by ONCOCNV, ADTEx and <t>NextGENe</t> for samples from dataset A. ( A ) Correlation between NRCs and log ratio values of array CGH. ( B ) Prediction accuracy. Accuracy = (#True predictions)/(#All predictions), where each prediction corresponds to a gene copy number status (gain, neutral or loss). ( C ) True-positive rate. ( D ) False-positive rate
Hiseq 2500 Machine, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/ultra-deep+pyrosequencing+data/TG+HiSeq+Rapid+SR+Cluster+Kit+v2/10__2147_slash_imcrj__s257654-33-22-21
Average 94 stars, based on 1 article reviews
hiseq 2500 machine - by Bioz Stars, 2026-10
94/100 stars
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oxford nanopore (ont) ‘ultra-long’ lrs data  (Oxford Nanopore)
90
Oxford Nanopore oxford nanopore (ont) ‘ultra-long’ lrs data
Comparison of RC normalization and accuracy of CNV calls achieved by ONCOCNV, ADTEx and <t>NextGENe</t> for samples from dataset A. ( A ) Correlation between NRCs and log ratio values of array CGH. ( B ) Prediction accuracy. Accuracy = (#True predictions)/(#All predictions), where each prediction corresponds to a gene copy number status (gain, neutral or loss). ( C ) True-positive rate. ( D ) False-positive rate
Oxford Nanopore (Ont) ‘Ultra Long’ Lrs Data, supplied by Oxford Nanopore, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/ultra-deep+pyrosequencing+data/lrs+oxford+nanopore/bio_rxiv__2025__03__31__646505-13-21-17
Average 90 stars, based on 1 article reviews
oxford nanopore (ont) ‘ultra-long’ lrs data - by Bioz Stars, 2026-10
90/100 stars
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point mutation detection  (Qiagen)
93
Qiagen point mutation detection
Comparison of RC normalization and accuracy of CNV calls achieved by ONCOCNV, ADTEx and <t>NextGENe</t> for samples from dataset A. ( A ) Correlation between NRCs and log ratio values of array CGH. ( B ) Prediction accuracy. Accuracy = (#True predictions)/(#All predictions), where each prediction corresponds to a gene copy number status (gain, neutral or loss). ( C ) True-positive rate. ( D ) False-positive rate
Point Mutation Detection, supplied by Qiagen, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/ultra-deep+pyrosequencing+data/Type-it+Mutation+Detect+PCR+Kit/us12592321-783-4-10
Average 93 stars, based on 1 article reviews
point mutation detection - by Bioz Stars, 2026-10
93/100 stars
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pacbio hifi lrs data  (Pacific Biosciences)
86
Pacific Biosciences pacbio hifi lrs data
Comparison of RC normalization and accuracy of CNV calls achieved by ONCOCNV, ADTEx and <t>NextGENe</t> for samples from dataset A. ( A ) Correlation between NRCs and log ratio values of array CGH. ( B ) Prediction accuracy. Accuracy = (#True predictions)/(#All predictions), where each prediction corresponds to a gene copy number status (gain, neutral or loss). ( C ) True-positive rate. ( D ) False-positive rate
Pacbio Hifi Lrs Data, supplied by Pacific Biosciences, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/ultra-deep+pyrosequencing+data/biosciences+hifi+pacific/pm41285770-13-11-9
Average 86 stars, based on 1 article reviews
pacbio hifi lrs data - by Bioz Stars, 2026-10
86/100 stars
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ultra-long reads  (Oxford Nanopore)
90
Oxford Nanopore ultra-long reads
Comparison of RC normalization and accuracy of CNV calls achieved by ONCOCNV, ADTEx and <t>NextGENe</t> for samples from dataset A. ( A ) Correlation between NRCs and log ratio values of array CGH. ( B ) Prediction accuracy. Accuracy = (#True predictions)/(#All predictions), where each prediction corresponds to a gene copy number status (gain, neutral or loss). ( C ) True-positive rate. ( D ) False-positive rate
Ultra Long Reads, supplied by Oxford Nanopore, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/ultra-deep+pyrosequencing+data/ultra+long+reads/pmc11928152-6-4-5
Average 90 stars, based on 1 article reviews
ultra-long reads - by Bioz Stars, 2026-10
90/100 stars
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puregene gentra kit  (Gentra Systems)
86
Gentra Systems puregene gentra kit
Comparison of RC normalization and accuracy of CNV calls achieved by ONCOCNV, ADTEx and <t>NextGENe</t> for samples from dataset A. ( A ) Correlation between NRCs and log ratio values of array CGH. ( B ) Prediction accuracy. Accuracy = (#True predictions)/(#All predictions), where each prediction corresponds to a gene copy number status (gain, neutral or loss). ( C ) True-positive rate. ( D ) False-positive rate
Puregene Gentra Kit, supplied by Gentra Systems, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/ultra-deep+pyrosequencing+data/dna+isolation+kit+puregene/us12655417-153-68-69
Average 86 stars, based on 1 article reviews
puregene gentra kit - by Bioz Stars, 2026-10
86/100 stars
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Image Search Results


Comparison of RC normalization and accuracy of CNV calls achieved by ONCOCNV, ADTEx and NextGENe for samples from dataset A. ( A ) Correlation between NRCs and log ratio values of array CGH. ( B ) Prediction accuracy. Accuracy = (#True predictions)/(#All predictions), where each prediction corresponds to a gene copy number status (gain, neutral or loss). ( C ) True-positive rate. ( D ) False-positive rate

Journal: Bioinformatics

Article Title: Multi-factor data normalization enables the detection of copy number aberrations in amplicon sequencing data

doi: 10.1093/bioinformatics/btu436

Figure Lengend Snippet: Comparison of RC normalization and accuracy of CNV calls achieved by ONCOCNV, ADTEx and NextGENe for samples from dataset A. ( A ) Correlation between NRCs and log ratio values of array CGH. ( B ) Prediction accuracy. Accuracy = (#True predictions)/(#All predictions), where each prediction corresponds to a gene copy number status (gain, neutral or loss). ( C ) True-positive rate. ( D ) False-positive rate

Article Snippet: We decided to compare our CNA calling method in ultra-deep targeted sequencing data with two WES-specific tools: ADTEx ( Amarasinghe et al. , 2013 ), a method based on hidden Markov models (HMMs) for CNA calling in targeted (exome) sequencing data, and NextGENe, commercial software designed by SoftGenetics.

Techniques: Comparison

Example of CNVs called by ONCOCNV, ADTEx and NextGENe (Sample A1). ( A) Array CGH profile for sample A1, segmented using cghseg: purple (loss), orange (gain). x -axis corresponds to probe indexes. ( B) Copy number profile calculated by ONCOCNV. x -axis corresponds to amplicon indexes. ( C) Agreement between CNVs predicted from array CGHs and amplicon sequencing. Each vertical bar denotes a gene copy number status: white (neutral), purple (loss) and orange (gain)

Journal: Bioinformatics

Article Title: Multi-factor data normalization enables the detection of copy number aberrations in amplicon sequencing data

doi: 10.1093/bioinformatics/btu436

Figure Lengend Snippet: Example of CNVs called by ONCOCNV, ADTEx and NextGENe (Sample A1). ( A) Array CGH profile for sample A1, segmented using cghseg: purple (loss), orange (gain). x -axis corresponds to probe indexes. ( B) Copy number profile calculated by ONCOCNV. x -axis corresponds to amplicon indexes. ( C) Agreement between CNVs predicted from array CGHs and amplicon sequencing. Each vertical bar denotes a gene copy number status: white (neutral), purple (loss) and orange (gain)

Article Snippet: We decided to compare our CNA calling method in ultra-deep targeted sequencing data with two WES-specific tools: ADTEx ( Amarasinghe et al. , 2013 ), a method based on hidden Markov models (HMMs) for CNA calling in targeted (exome) sequencing data, and NextGENe, commercial software designed by SoftGenetics.

Techniques: Amplification, Sequencing